{
  "study_id": "STUDY-COLEOPTERA-6FAM-FUNCTION-SKYLINE-2026",
  "slug": "coleoptera-ecosystem-function-skyline",
  "preprint_slug": "coleoptera-ecosystem-function-preprint",
  "preprint_id": "PREPRINT-18",
  "validation_set_id": "VAL-SET-057-COLEOPTERA-FUNCTION-SKYLINE-212RECS",
  "generated_at_utc": "2026-11-08T18:05:14.870Z",
  "dataset_audit": {
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    "total_raw_bp_on_disk": 1178454,
    "core_species_count": 64,
    "core_loci_count": 16,
    "nuclear_records_count": 40,
    "popset_isolates_count": 108,
    "supermatrix_aligned_cols": 37741,
    "mito_aligned_cols": 33628,
    "nuclear_aligned_cols": 4113,
    "supermatrix_distinct_patterns": 19601,
    "supermatrix_parsimony_informative": 15440,
    "rcfv_native_ry3": 0.0067,
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    "rcfv_raw_0star": 0.0451,
    "mafft_stage_stats": {
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        "elapsedSec": 299.527,
        "alignedCols": 33628,
        "nSeqs": 64
      },
      "nuc40": {
        "elapsedSec": 2.549,
        "alignedCols": 4113,
        "nSeqs": 40
      },
      "popset1": {
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      },
      "popset2": {
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        "alignedCols": 709,
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      },
      "popset3": {
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        "alignedCols": 868,
        "nSeqs": 36
      }
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    "generations": 10000,
    "burnin_discarded": 2000,
    "post_burnin_samples": 8000,
    "native_gotoh_msa_ms": 12840,
    "native_modeltest_ms": 1420,
    "native_mcmc_ms": 3680,
    "native_total_cpu_ms": 17940,
    "external_mafft_ms": 302076,
    "external_iqtree_ms": 1662062,
    "external_beast_ms": 5063
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  "lsd2_molecular_clock": {
    "substitution_rate_per_site_per_ma": 0.00140336,
    "rate_ci_95": [
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      0.00149882
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    "tmrca_root_ma": 308,
    "crown_coleoptera_ma": 295,
    "objective_function": 13.0562,
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  },
  "paml_codeml_functional_selection": {
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      "bp": 540,
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      "bp": 480,
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      "tool_chain_summary": "super-blast-adaptive -> *MAFFT v7.526 -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest -> *IQ-TREE v2.4.0 (GTR+F+I+G4) -> *LSD2 v2.4.4 -> runie-mcmc-skyline -> *PAML v4.10.10",
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    {
      "regime_id": "Regime 3: Unconstrained Hybrid RuNIE (super-blast -> *MAFFT v7.526 -> popgen-blind-dualpass [RY3] -> *IQ-TREE v2.4.0 -> *LSD2 -> runie-mcmc-skyline -> *PAML v4.10.10)",
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      "global_rank": 3,
      "tool_chain_summary": "super-blast-adaptive -> *MAFFT v7.526 -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest -> *IQ-TREE v2.4.0 (GTR+F+G4) -> *LSD2 v2.4.4 -> runie-mcmc-skyline -> *PAML v4.10.10",
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    },
    {
      "regime_id": "Regime 3: Unconstrained Hybrid RuNIE (super-blast -> *MAFFT v7.526 -> popgen-blind-dualpass [RY3] -> *IQ-TREE v2.4.0 -> *LSD2 -> runie-mcmc-skyline -> *PAML v4.10.10)",
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      "global_rank": 4,
      "tool_chain_summary": "super-blast-adaptive -> *MAFFT v7.526 -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest -> *IQ-TREE v2.4.0 (TIM2+F+I+G4) -> *LSD2 v2.4.4 -> runie-mcmc-skyline -> *PAML v4.10.10",
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    {
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      "global_rank": 5,
      "tool_chain_summary": "super-blast-adaptive -> *MAFFT v7.526 -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest -> *IQ-TREE v2.4.0 (TN+F+I+G4) -> *LSD2 v2.4.4 -> runie-mcmc-skyline -> *PAML v4.10.10",
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    {
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      "global_rank": 6,
      "tool_chain_summary": "super-blast-adaptive -> *MAFFT v7.526 -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest -> *IQ-TREE v2.4.0 (HKY+F+I+G4) -> *LSD2 v2.4.4 -> runie-mcmc-skyline -> *PAML v4.10.10",
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    {
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      "tool_chain_summary": "super-blast-adaptive -> gotoh-msa -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest (HKY+F+I+G4) -> runie-mcmc-skyline (10k gen, 20% burn-in) -> dnds-selection",
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    {
      "regime_id": "Regime 1: 100% Native Rust (super-blast -> gotoh-msa -> popgen-blind-dualpass -> RY3 -> felsenstein-modeltest -> runie-mcmc-skyline)",
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      "global_rank": 8,
      "tool_chain_summary": "super-blast-adaptive -> gotoh-msa -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest (TN+F+I+G4) -> runie-mcmc-skyline (10k gen, 20% burn-in) -> dnds-selection",
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      "msa_time_ms": 12840,
      "modeltest_time_ms": 110,
      "tree_mcmc_time_ms": 3680,
      "total_cpu_time_ms": 16630
    },
    {
      "regime_id": "Regime 1: 100% Native Rust (super-blast -> gotoh-msa -> popgen-blind-dualpass -> RY3 -> felsenstein-modeltest -> runie-mcmc-skyline)",
      "chain_rank_in_regime": 4,
      "global_rank": 9,
      "tool_chain_summary": "super-blast-adaptive -> gotoh-msa -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest (TIM2+F+I+G4) -> runie-mcmc-skyline (10k gen, 20% burn-in) -> dnds-selection",
      "model_name": "TIM2+F+I+G4",
      "k_free_params": 133,
      "marginal_ln_l": -552734.8013,
      "delta_ln_l_vs_best": -8396.7146,
      "aic": 1105735.6027,
      "bic": 1106871.2235,
      "rcfv": 0.0067,
      "bootstrap_support_pct": 96.2,
      "posterior_prob": 0.941,
      "msa_time_ms": 12840,
      "modeltest_time_ms": 110,
      "tree_mcmc_time_ms": 3680,
      "total_cpu_time_ms": 16630
    },
    {
      "regime_id": "Regime 1: 100% Native Rust (super-blast -> gotoh-msa -> popgen-blind-dualpass -> RY3 -> felsenstein-modeltest -> runie-mcmc-skyline)",
      "chain_rank_in_regime": 1,
      "global_rank": 10,
      "tool_chain_summary": "super-blast-adaptive -> gotoh-msa -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest (GTR+F+R4) -> runie-mcmc-skyline (10k gen, 20% burn-in) -> dnds-selection",
      "model_name": "GTR+F+R4",
      "k_free_params": 137,
      "marginal_ln_l": -553279.1758,
      "delta_ln_l_vs_best": -8941.0891,
      "aic": 1106832.3517,
      "bic": 1108002.1265,
      "rcfv": 0.0067,
      "bootstrap_support_pct": 99.4,
      "posterior_prob": 0.9998,
      "msa_time_ms": 12840,
      "modeltest_time_ms": 110,
      "tree_mcmc_time_ms": 3680,
      "total_cpu_time_ms": 16630
    },
    {
      "regime_id": "Regime 1: 100% Native Rust (super-blast -> gotoh-msa -> popgen-blind-dualpass -> RY3 -> felsenstein-modeltest -> runie-mcmc-skyline)",
      "chain_rank_in_regime": 2,
      "global_rank": 11,
      "tool_chain_summary": "super-blast-adaptive -> gotoh-msa -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest (GTR+F+I+G4) -> runie-mcmc-skyline (10k gen, 20% burn-in) -> dnds-selection",
      "model_name": "GTR+F+I+G4",
      "k_free_params": 135,
      "marginal_ln_l": -553295.4727,
      "delta_ln_l_vs_best": -8957.386,
      "aic": 1106860.9455,
      "bic": 1108013.6433,
      "rcfv": 0.0067,
      "bootstrap_support_pct": 99.4,
      "posterior_prob": 0.9998,
      "msa_time_ms": 12840,
      "modeltest_time_ms": 110,
      "tree_mcmc_time_ms": 3680,
      "total_cpu_time_ms": 16630
    },
    {
      "regime_id": "Regime 1: 100% Native Rust (super-blast -> gotoh-msa -> popgen-blind-dualpass -> RY3 -> felsenstein-modeltest -> runie-mcmc-skyline)",
      "chain_rank_in_regime": 3,
      "global_rank": 12,
      "tool_chain_summary": "super-blast-adaptive -> gotoh-msa -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest (GTR+F+G4) -> runie-mcmc-skyline (10k gen, 20% burn-in) -> dnds-selection",
      "model_name": "GTR+F+G4",
      "k_free_params": 134,
      "marginal_ln_l": -554995.9131,
      "delta_ln_l_vs_best": -10657.8264,
      "aic": 1110259.8262,
      "bic": 1111403.9856,
      "rcfv": 0.0067,
      "bootstrap_support_pct": 96.2,
      "posterior_prob": 0.941,
      "msa_time_ms": 12840,
      "modeltest_time_ms": 110,
      "tree_mcmc_time_ms": 3680,
      "total_cpu_time_ms": 16630
    },
    {
      "regime_id": "Regime 3: Unconstrained Hybrid RuNIE (super-blast -> *MAFFT v7.526 -> popgen-blind-dualpass [RY3] -> *IQ-TREE v2.4.0 -> *LSD2 -> runie-mcmc-skyline -> *PAML v4.10.10)",
      "chain_rank_in_regime": 7,
      "global_rank": 13,
      "tool_chain_summary": "super-blast-adaptive -> *MAFFT v7.526 -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest -> *IQ-TREE v2.4.0 (K80+G4) -> *LSD2 v2.4.4 -> runie-mcmc-skyline -> *PAML v4.10.10",
      "model_name": "K80+G4",
      "k_free_params": 127,
      "marginal_ln_l": -604960.2863,
      "delta_ln_l_vs_best": -60622.1996,
      "aic": 1210174.5725,
      "bic": 1211258.9623,
      "rcfv": 0.0067,
      "bootstrap_support_pct": 99.8,
      "posterior_prob": 1,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 16234,
      "tree_mcmc_time_ms": 3680,
      "total_cpu_time_ms": 321990
    },
    {
      "regime_id": "Regime 2: 100% External Reference (*MAFFT v7.526 -> *IQ-TREE v2.4.0 -> *LSD2 v2.4.4 -> *BEAST v1.10.4 -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10)",
      "chain_rank_in_regime": 1,
      "global_rank": 14,
      "tool_chain_summary": "*MAFFT v7.526 -> *IQ-TREE v2.4.0 (GTR+F+R4) -> *LSD2 v2.4.4 -> *BEAST v1.10.4 (10k gen, 20% burn-in) -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10",
      "model_name": "GTR+F+R4",
      "k_free_params": 139,
      "marginal_ln_l": -620621.2353,
      "delta_ln_l_vs_best": -76283.1486,
      "aic": 1241520.4706,
      "bic": 1242707.3224,
      "rcfv": 0.0447,
      "bootstrap_support_pct": 98.2,
      "posterior_prob": 0.999,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 69688,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 376827
    },
    {
      "regime_id": "Regime 2: 100% External Reference (*MAFFT v7.526 -> *IQ-TREE v2.4.0 -> *LSD2 v2.4.4 -> *BEAST v1.10.4 -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10)",
      "chain_rank_in_regime": 2,
      "global_rank": 15,
      "tool_chain_summary": "*MAFFT v7.526 -> *IQ-TREE v2.4.0 (GTR+F+I+G4) -> *LSD2 v2.4.4 -> *BEAST v1.10.4 (10k gen, 20% burn-in) -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10",
      "model_name": "GTR+F+I+G4",
      "k_free_params": 137,
      "marginal_ln_l": -620828.7969,
      "delta_ln_l_vs_best": -76490.7102,
      "aic": 1241927.5939,
      "bic": 1243080.2917,
      "rcfv": 0.0447,
      "bootstrap_support_pct": 98.2,
      "posterior_prob": 0.999,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 1205922,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 1513061
    },
    {
      "regime_id": "Regime 4: 0-Beaker Rejected Uncleaned Negative Control (Unrecoded Saturation + Unfiltered Strepsiptera/NUMT Compositional Chimera)",
      "chain_rank_in_regime": 1,
      "global_rank": 16,
      "tool_chain_summary": "Raw Uncleaned Supermatrix -> No RY3 / No Chimera Filter -> *IQ-TREE v2.4.0 (GTR+F+R4) -> Uncleaned Skyline (0-Beaker Rejected)",
      "model_name": "GTR+F+R4",
      "k_free_params": 139,
      "marginal_ln_l": -621158.2066,
      "delta_ln_l_vs_best": -76820.1199,
      "aic": 1242594.4131,
      "bic": 1243781.2649,
      "rcfv": 0.0451,
      "bootstrap_support_pct": 62.4,
      "posterior_prob": 0.0001,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 87875,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 395014
    },
    {
      "regime_id": "Regime 4: 0-Beaker Rejected Uncleaned Negative Control (Unrecoded Saturation + Unfiltered Strepsiptera/NUMT Compositional Chimera)",
      "chain_rank_in_regime": 2,
      "global_rank": 17,
      "tool_chain_summary": "Raw Uncleaned Supermatrix -> No RY3 / No Chimera Filter -> *IQ-TREE v2.4.0 (GTR+F+I+G4) -> Uncleaned Skyline (0-Beaker Rejected)",
      "model_name": "GTR+F+I+G4",
      "k_free_params": 137,
      "marginal_ln_l": -621312.6041,
      "delta_ln_l_vs_best": -76974.5174,
      "aic": 1242895.2082,
      "bic": 1244047.906,
      "rcfv": 0.0451,
      "bootstrap_support_pct": 62.4,
      "posterior_prob": 0.0001,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 1297050,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 1604189
    },
    {
      "regime_id": "Regime 2: 100% External Reference (*MAFFT v7.526 -> *IQ-TREE v2.4.0 -> *LSD2 v2.4.4 -> *BEAST v1.10.4 -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10)",
      "chain_rank_in_regime": 3,
      "global_rank": 18,
      "tool_chain_summary": "*MAFFT v7.526 -> *IQ-TREE v2.4.0 (GTR+F+G4) -> *LSD2 v2.4.4 -> *BEAST v1.10.4 (10k gen, 20% burn-in) -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10",
      "model_name": "GTR+F+G4",
      "k_free_params": 135,
      "marginal_ln_l": -621708.5973,
      "delta_ln_l_vs_best": -77370.5106,
      "aic": 1243685.1946,
      "bic": 1244829.3539,
      "rcfv": 0.0447,
      "bootstrap_support_pct": 98.2,
      "posterior_prob": 0.999,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 58875,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 366014
    },
    {
      "regime_id": "Regime 4: 0-Beaker Rejected Uncleaned Negative Control (Unrecoded Saturation + Unfiltered Strepsiptera/NUMT Compositional Chimera)",
      "chain_rank_in_regime": 3,
      "global_rank": 19,
      "tool_chain_summary": "Raw Uncleaned Supermatrix -> No RY3 / No Chimera Filter -> *IQ-TREE v2.4.0 (GTR+F+G4) -> Uncleaned Skyline (0-Beaker Rejected)",
      "model_name": "GTR+F+G4",
      "k_free_params": 135,
      "marginal_ln_l": -622204.1122,
      "delta_ln_l_vs_best": -77866.0255,
      "aic": 1244676.2243,
      "bic": 1245820.3836,
      "rcfv": 0.0451,
      "bootstrap_support_pct": 62.4,
      "posterior_prob": 0.0001,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 51797,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 358936
    },
    {
      "regime_id": "Regime 2: 100% External Reference (*MAFFT v7.526 -> *IQ-TREE v2.4.0 -> *LSD2 v2.4.4 -> *BEAST v1.10.4 -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10)",
      "chain_rank_in_regime": 4,
      "global_rank": 20,
      "tool_chain_summary": "*MAFFT v7.526 -> *IQ-TREE v2.4.0 (TIM2+F+I+G4) -> *LSD2 v2.4.4 -> *BEAST v1.10.4 (10k gen, 20% burn-in) -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10",
      "model_name": "TIM2+F+I+G4",
      "k_free_params": 133,
      "marginal_ln_l": -623531.1494,
      "delta_ln_l_vs_best": -79193.0627,
      "aic": 1247328.2987,
      "bic": 1248463.9195,
      "rcfv": 0.0447,
      "bootstrap_support_pct": 98.2,
      "posterior_prob": 0.999,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 59078,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 366217
    },
    {
      "regime_id": "Regime 4: 0-Beaker Rejected Uncleaned Negative Control (Unrecoded Saturation + Unfiltered Strepsiptera/NUMT Compositional Chimera)",
      "chain_rank_in_regime": 4,
      "global_rank": 21,
      "tool_chain_summary": "Raw Uncleaned Supermatrix -> No RY3 / No Chimera Filter -> *IQ-TREE v2.4.0 (TIM2+F+I+G4) -> Uncleaned Skyline (0-Beaker Rejected)",
      "model_name": "TIM2+F+I+G4",
      "k_free_params": 133,
      "marginal_ln_l": -623650.886,
      "delta_ln_l_vs_best": -79312.7993,
      "aic": 1247567.7721,
      "bic": 1248703.3929,
      "rcfv": 0.0451,
      "bootstrap_support_pct": 62.4,
      "posterior_prob": 0.0001,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 56891,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 364030
    },
    {
      "regime_id": "Regime 2: 100% External Reference (*MAFFT v7.526 -> *IQ-TREE v2.4.0 -> *LSD2 v2.4.4 -> *BEAST v1.10.4 -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10)",
      "chain_rank_in_regime": 5,
      "global_rank": 22,
      "tool_chain_summary": "*MAFFT v7.526 -> *IQ-TREE v2.4.0 (TN+F+I+G4) -> *LSD2 v2.4.4 -> *BEAST v1.10.4 (10k gen, 20% burn-in) -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10",
      "model_name": "TN+F+I+G4",
      "k_free_params": 131,
      "marginal_ln_l": -623890.0382,
      "delta_ln_l_vs_best": -79551.9515,
      "aic": 1248044.0765,
      "bic": 1249171.1588,
      "rcfv": 0.0447,
      "bootstrap_support_pct": 98.2,
      "posterior_prob": 0.999,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 57016,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 364155
    },
    {
      "regime_id": "Regime 4: 0-Beaker Rejected Uncleaned Negative Control (Unrecoded Saturation + Unfiltered Strepsiptera/NUMT Compositional Chimera)",
      "chain_rank_in_regime": 5,
      "global_rank": 23,
      "tool_chain_summary": "Raw Uncleaned Supermatrix -> No RY3 / No Chimera Filter -> *IQ-TREE v2.4.0 (TN+F+I+G4) -> Uncleaned Skyline (0-Beaker Rejected)",
      "model_name": "TN+F+I+G4",
      "k_free_params": 131,
      "marginal_ln_l": -624303.3527,
      "delta_ln_l_vs_best": -79965.266,
      "aic": 1248870.7054,
      "bic": 1249997.7877,
      "rcfv": 0.0451,
      "bootstrap_support_pct": 62.4,
      "posterior_prob": 0.0001,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 52781,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 359920
    },
    {
      "regime_id": "Regime 2: 100% External Reference (*MAFFT v7.526 -> *IQ-TREE v2.4.0 -> *LSD2 v2.4.4 -> *BEAST v1.10.4 -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10)",
      "chain_rank_in_regime": 6,
      "global_rank": 24,
      "tool_chain_summary": "*MAFFT v7.526 -> *IQ-TREE v2.4.0 (HKY+F+I+G4) -> *LSD2 v2.4.4 -> *BEAST v1.10.4 (10k gen, 20% burn-in) -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10",
      "model_name": "HKY+F+I+G4",
      "k_free_params": 129,
      "marginal_ln_l": -625448.6251,
      "delta_ln_l_vs_best": -81110.5384,
      "aic": 1251159.2502,
      "bic": 1252277.794,
      "rcfv": 0.0447,
      "bootstrap_support_pct": 98.2,
      "posterior_prob": 0.999,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 49188,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 356327
    },
    {
      "regime_id": "Regime 4: 0-Beaker Rejected Uncleaned Negative Control (Unrecoded Saturation + Unfiltered Strepsiptera/NUMT Compositional Chimera)",
      "chain_rank_in_regime": 6,
      "global_rank": 25,
      "tool_chain_summary": "Raw Uncleaned Supermatrix -> No RY3 / No Chimera Filter -> *IQ-TREE v2.4.0 (HKY+F+I+G4) -> Uncleaned Skyline (0-Beaker Rejected)",
      "model_name": "HKY+F+I+G4",
      "k_free_params": 129,
      "marginal_ln_l": -625964.3378,
      "delta_ln_l_vs_best": -81626.2511,
      "aic": 1252190.6756,
      "bic": 1253309.2194,
      "rcfv": 0.0451,
      "bootstrap_support_pct": 62.4,
      "posterior_prob": 0.0001,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 44344,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 351483
    },
    {
      "regime_id": "Regime 1: 100% Native Rust (super-blast -> gotoh-msa -> popgen-blind-dualpass -> RY3 -> felsenstein-modeltest -> runie-mcmc-skyline)",
      "chain_rank_in_regime": 7,
      "global_rank": 26,
      "tool_chain_summary": "super-blast-adaptive -> gotoh-msa -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest (K80+G4) -> runie-mcmc-skyline (10k gen, 20% burn-in) -> dnds-selection",
      "model_name": "K80+G4",
      "k_free_params": 127,
      "marginal_ln_l": -635821.6477,
      "delta_ln_l_vs_best": -91483.561,
      "aic": 1271897.2954,
      "bic": 1272981.6852,
      "rcfv": 0.0067,
      "bootstrap_support_pct": 96.2,
      "posterior_prob": 0.941,
      "msa_time_ms": 12840,
      "modeltest_time_ms": 110,
      "tree_mcmc_time_ms": 3680,
      "total_cpu_time_ms": 16630
    },
    {
      "regime_id": "Regime 3: Unconstrained Hybrid RuNIE (super-blast -> *MAFFT v7.526 -> popgen-blind-dualpass [RY3] -> *IQ-TREE v2.4.0 -> *LSD2 -> runie-mcmc-skyline -> *PAML v4.10.10)",
      "chain_rank_in_regime": 8,
      "global_rank": 27,
      "tool_chain_summary": "super-blast-adaptive -> *MAFFT v7.526 -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest -> *IQ-TREE v2.4.0 (JC) -> *LSD2 v2.4.4 -> runie-mcmc-skyline -> *PAML v4.10.10",
      "model_name": "JC",
      "k_free_params": 125,
      "marginal_ln_l": -654961.2768,
      "delta_ln_l_vs_best": -110623.1901,
      "aic": 1310172.5537,
      "bic": 1311239.8665,
      "rcfv": 0.0067,
      "bootstrap_support_pct": 99.8,
      "posterior_prob": 1,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 3641,
      "tree_mcmc_time_ms": 3680,
      "total_cpu_time_ms": 309397
    },
    {
      "regime_id": "Regime 2: 100% External Reference (*MAFFT v7.526 -> *IQ-TREE v2.4.0 -> *LSD2 v2.4.4 -> *BEAST v1.10.4 -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10)",
      "chain_rank_in_regime": 7,
      "global_rank": 28,
      "tool_chain_summary": "*MAFFT v7.526 -> *IQ-TREE v2.4.0 (K80+G4) -> *LSD2 v2.4.4 -> *BEAST v1.10.4 (10k gen, 20% burn-in) -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10",
      "model_name": "K80+G4",
      "k_free_params": 127,
      "marginal_ln_l": -665806.3409,
      "delta_ln_l_vs_best": -121468.2542,
      "aic": 1331866.6818,
      "bic": 1332951.0716,
      "rcfv": 0.0447,
      "bootstrap_support_pct": 98.2,
      "posterior_prob": 0.999,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 16438,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 323577
    },
    {
      "regime_id": "Regime 4: 0-Beaker Rejected Uncleaned Negative Control (Unrecoded Saturation + Unfiltered Strepsiptera/NUMT Compositional Chimera)",
      "chain_rank_in_regime": 7,
      "global_rank": 29,
      "tool_chain_summary": "Raw Uncleaned Supermatrix -> No RY3 / No Chimera Filter -> *IQ-TREE v2.4.0 (K80+G4) -> Uncleaned Skyline (0-Beaker Rejected)",
      "model_name": "K80+G4",
      "k_free_params": 127,
      "marginal_ln_l": -666696.6226,
      "delta_ln_l_vs_best": -122358.5359,
      "aic": 1333647.2452,
      "bic": 1334731.635,
      "rcfv": 0.0451,
      "bootstrap_support_pct": 62.4,
      "posterior_prob": 0.0001,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 14516,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 321655
    },
    {
      "regime_id": "Regime 1: 100% Native Rust (super-blast -> gotoh-msa -> popgen-blind-dualpass -> RY3 -> felsenstein-modeltest -> runie-mcmc-skyline)",
      "chain_rank_in_regime": 8,
      "global_rank": 30,
      "tool_chain_summary": "super-blast-adaptive -> gotoh-msa -> popgen-blind-dualpass (RY3) -> felsenstein-modeltest (JC) -> runie-mcmc-skyline (10k gen, 20% burn-in) -> dnds-selection",
      "model_name": "JC",
      "k_free_params": 125,
      "marginal_ln_l": -686315.7244,
      "delta_ln_l_vs_best": -141977.6377,
      "aic": 1372881.4488,
      "bic": 1373948.7616,
      "rcfv": 0.0067,
      "bootstrap_support_pct": 96.2,
      "posterior_prob": 0.941,
      "msa_time_ms": 12840,
      "modeltest_time_ms": 110,
      "tree_mcmc_time_ms": 3680,
      "total_cpu_time_ms": 16630
    },
    {
      "regime_id": "Regime 2: 100% External Reference (*MAFFT v7.526 -> *IQ-TREE v2.4.0 -> *LSD2 v2.4.4 -> *BEAST v1.10.4 -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10)",
      "chain_rank_in_regime": 8,
      "global_rank": 31,
      "tool_chain_summary": "*MAFFT v7.526 -> *IQ-TREE v2.4.0 (JC) -> *LSD2 v2.4.4 -> *BEAST v1.10.4 (10k gen, 20% burn-in) -> *TreeAnnotator v1.10.4 -> *PAML v4.10.10",
      "model_name": "JC",
      "k_free_params": 125,
      "marginal_ln_l": -715227.1772,
      "delta_ln_l_vs_best": -170889.0905,
      "aic": 1430704.3544,
      "bic": 1431771.6671,
      "rcfv": 0.0447,
      "bootstrap_support_pct": 98.2,
      "posterior_prob": 0.999,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 4078,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 311217
    },
    {
      "regime_id": "Regime 4: 0-Beaker Rejected Uncleaned Negative Control (Unrecoded Saturation + Unfiltered Strepsiptera/NUMT Compositional Chimera)",
      "chain_rank_in_regime": 8,
      "global_rank": 32,
      "tool_chain_summary": "Raw Uncleaned Supermatrix -> No RY3 / No Chimera Filter -> *IQ-TREE v2.4.0 (JC) -> Uncleaned Skyline (0-Beaker Rejected)",
      "model_name": "JC",
      "k_free_params": 125,
      "marginal_ln_l": -715841.5842,
      "delta_ln_l_vs_best": -171503.4975,
      "aic": 1431933.1683,
      "bic": 1433000.4811,
      "rcfv": 0.0451,
      "bootstrap_support_pct": 62.4,
      "posterior_prob": 0.0001,
      "msa_time_ms": 302076,
      "modeltest_time_ms": 3125,
      "tree_mcmc_time_ms": 5063,
      "total_cpu_time_ms": 310264
    }
  ],
  "core_taxa_manifest": [
    {
      "id": "T001",
      "sector": "A",
      "acc": "NC_086511.1",
      "species": "Halter nutans",
      "family": "Nemopteridae (Outgroup)",
      "suborder": "Neuropterida",
      "guild": "Aerial nectarivore / larval ambush predator",
      "traits": "Elongated hindwings; larval suctorial mandibles",
      "enzymes": "Baseline insect digestive proteases",
      "eco": "Arid-zone pollination & soil micro-predation",
      "len": 15839,
      "gcPct": 26.57,
      "sha256": "39eeb6dab1e562a1",
      "header": "NC_086511.1 Halter nutans voucher HNIR1 mitochondrion, complete genome"
    },
    {
      "id": "T002",
      "sector": "A",
      "acc": "NC_011277.1",
      "species": "Ascaloptynx appendiculata",
      "family": "Ascalaphidae (Outgroup)",
      "suborder": "Neuropterida",
      "guild": "Aerial insectivore",
      "traits": "Divided compound eyes; cursorial-ambush larvae",
      "enzymes": "Baseline chitinase + serine proteases",
      "eco": "Aerial macro-insect regulation",
      "len": 15877,
      "gcPct": 24.43,
      "sha256": "591ede272a28b285",
      "header": "NC_011277.1 Ascaloptynx appendiculatus mitochondrion, complete genome"
    },
    {
      "id": "T003",
      "sector": "A",
      "acc": "MW820160.1",
      "species": "Tenomerga trabecula",
      "family": "Cupedidae (Archostemata)",
      "suborder": "Archostemata",
      "guild": "Rotten-wood mycophage / saproxylophage",
      "traits": "Tuberculate cuticular scales; wood-boring larvae",
      "enzymes": "Fungal-symbiont-assisted wood decay",
      "eco": "Relictual deadwood fungal nutrient cycling",
      "len": 16741,
      "gcPct": 23.16,
      "sha256": "96549fcee742a2e7",
      "header": "MW820160.1 Tenomerga trabecula mitochondrion, complete genome"
    },
    {
      "id": "T004",
      "sector": "A",
      "acc": "NC_012144.1",
      "species": "Hydroscapha granulum",
      "family": "Hydroscaphidae (Myxophaga)",
      "suborder": "Myxophaga",
      "guild": "Hygropetric algivore",
      "traits": "Spiracular gills; miniaturized aquatic body",
      "enzymes": "Algal polysaccharide laminarinases",
      "eco": "Riffle biofilm primary grazing",
      "len": 15975,
      "gcPct": 22.7,
      "sha256": "caad70e661aa54f5",
      "header": "NC_012144.1 Hydroscapha granulum mitochondrion, complete genome"
    },
    {
      "id": "T005",
      "sector": "B",
      "acc": "NC_086719.1",
      "species": "Bembidion laterale",
      "family": "Carabidae",
      "suborder": "Adephaga",
      "guild": "Riparian epigean micro-predator",
      "traits": "Cursorial legs; prognathous mandibles; pygidial glands",
      "enzymes": "Serine/cysteine endoproteases; formic/quinonoid spray",
      "eco": "Estuarine & riparian arthropod regulation",
      "len": 15990,
      "gcPct": 20.39,
      "sha256": "3ac48f8da7c301da",
      "header": "NC_086719.1 Bembidion laterale mitochondrion, complete genome"
    },
    {
      "id": "T006",
      "sector": "B",
      "acc": "NC_086655.1",
      "species": "Chlaenius naeviger",
      "family": "Carabidae",
      "suborder": "Adephaga",
      "guild": "Epigean lepidopteran/coleopteran predator",
      "traits": "Prognathous mandibles; phenolic pygidial defense",
      "enzymes": "m-Cresol pygidial secretion; extra-oral proteases",
      "eco": "Agroecosystem defoliator suppression",
      "len": 16594,
      "gcPct": 21.28,
      "sha256": "771619408d99f9b3",
      "header": "NC_086655.1 Chlaenius naeviger mitochondrion, complete genome"
    },
    {
      "id": "T007",
      "sector": "B",
      "acc": "NC_085183.1",
      "species": "Synuchus nitidus",
      "family": "Carabidae",
      "suborder": "Adephaga",
      "guild": "Forest-floor cursorial predator",
      "traits": "Slender cursorial tarsi; nocturnal hunting",
      "enzymes": "Extra-oral trypsin/chymotrypsin cascade",
      "eco": "Temperate forest litter food-web stability",
      "len": 16392,
      "gcPct": 19.72,
      "sha256": "741381fefa8d9bee",
      "header": "NC_085183.1 Synuchus nitidus mitochondrion, complete genome"
    },
    {
      "id": "T008",
      "sector": "B",
      "acc": "NC_066084.1",
      "species": "Galerita orientalis",
      "family": "Carabidae",
      "suborder": "Adephaga",
      "guild": "Fast-running epigean macro-predator",
      "traits": "Constricted prothorax; formic-acid pygidial spray",
      "enzymes": "80% formic acid + acetic ester defense",
      "eco": "Top-down regulation of soil caterpillars",
      "len": 16137,
      "gcPct": 21.21,
      "sha256": "399603f46a54b81f",
      "header": "NC_066084.1 Galerita orientalis mitochondrion, complete genome"
    },
    {
      "id": "T009",
      "sector": "B",
      "acc": "NC_065263.1",
      "species": "Mastax latefasciata",
      "family": "Carabidae",
      "suborder": "Adephaga",
      "guild": "Bombardier-clade thermal-spray predator",
      "traits": "Bipartite pygidial reaction chamber (Brachininae)",
      "enzymes": "Catalase + peroxidase hydroquinone explosion (100 C)",
      "eco": "Riparian predator guild defense & ectoparasitoidism",
      "len": 16735,
      "gcPct": 18.93,
      "sha256": "1e0556edab861e5a",
      "header": "NC_065263.1 Mastax latefasciata mitochondrion, complete genome"
    },
    {
      "id": "T010",
      "sector": "B",
      "acc": "NC_067050.1",
      "species": "Diplocheila zeelandica",
      "family": "Carabidae",
      "suborder": "Adephaga",
      "guild": "Wetland hygrophilous epigean predator",
      "traits": "Incisive mandibles; marsh-margin locomotion",
      "enzymes": "Hydrolytic lipases + serine proteases",
      "eco": "Paddy & wetland pest bio-indicator",
      "len": 16190,
      "gcPct": 21.62,
      "sha256": "812cf1ec64423f95",
      "header": "NC_067050.1 Diplocheila zeelandica mitochondrion, complete genome"
    },
    {
      "id": "T011",
      "sector": "B",
      "acc": "NC_064369.1",
      "species": "Notiophilus quadripunctatus",
      "family": "Carabidae",
      "suborder": "Adephaga",
      "guild": "Diurnal visual springtail (Collembola) predator",
      "traits": "Hypertrophied compound eyes; rapid strike",
      "enzymes": "Chitinolytic gut endo-beta-N-acetylglucosaminidase",
      "eco": "Micro-arthropod litter decomposition balance",
      "len": 15312,
      "gcPct": 22,
      "sha256": "44844c274634922b",
      "header": "NC_064369.1 Notiophilus quadripunctatus voucher ZSM CAR_0002 mitochondrion, complete genome"
    },
    {
      "id": "T012",
      "sector": "B",
      "acc": "NC_066078.1",
      "species": "Nipponoharpalus discrepans",
      "family": "Carabidae",
      "suborder": "Adephaga",
      "guild": "Derived granivore / omnivore (Harpalini)",
      "traits": "Stout molariform mandibles; seed-husking behavior",
      "enzymes": "Alpha-amylase + seed-lipid esterases",
      "eco": "Weed seed-bank predation in agroecosystems",
      "len": 16027,
      "gcPct": 19.22,
      "sha256": "029f09261ad9c1c1",
      "header": "NC_066078.1 Harpalus discrepans mitochondrion, complete genome"
    },
    {
      "id": "T013",
      "sector": "B",
      "acc": "NC_067049.1",
      "species": "Amara ovata",
      "family": "Carabidae",
      "suborder": "Adephaga",
      "guild": "Phytophagous-granivorous ground beetle (Zabrini)",
      "traits": "Climbing tarsal pads; crucifer/weed seed feeding",
      "enzymes": "Derived plant-starch amylases + glucosinolate tolerance",
      "eco": "Arable weed-seed suppression & soil bio-indication",
      "len": 15334,
      "gcPct": 19.88,
      "sha256": "576776730e364659",
      "header": "NC_067049.1 Amara ovata mitochondrion, complete genome"
    },
    {
      "id": "T014",
      "sector": "B",
      "acc": "NC_066080.1",
      "species": "Harpalus griseus",
      "family": "Carabidae",
      "suborder": "Adephaga",
      "guild": "Omnivorous epigean granivore-predator (Harpalini)",
      "traits": "Fossorial-cursorial legs; nocturnal flight",
      "enzymes": "Dual protease + seed-polysaccharide hydrolases",
      "eco": "Cereal-field weed & aphid dual biocontrol",
      "len": 16972,
      "gcPct": 19.59,
      "sha256": "72959d903d13d921",
      "header": "NC_066080.1 Harpalus griseus mitochondrion, complete genome"
    },
    {
      "id": "T015",
      "sector": "C",
      "acc": "QB005904.1",
      "species": "Saprosites sp. sci3510",
      "family": "Scarabaeidae",
      "suborder": "Polyphaga",
      "guild": "Subcortical saproxylophage / detritivore (Aphodiinae)",
      "traits": "Cylindrical body; fossorial protibial teeth",
      "enzymes": "Hindgut fermentation chamber + microbial cellulases",
      "eco": "Subcortical deadwood humus formation",
      "len": 15891,
      "gcPct": 24.76,
      "sha256": "9adeaddc8ca659bc",
      "header": "QB005904.1 Saprosites sp. voucher sci3510 mitochondrion, complete genome"
    },
    {
      "id": "T016",
      "sector": "C",
      "acc": "QB005903.1",
      "species": "Ankaratrotrox sp. sci3479",
      "family": "Scarabaeidae",
      "suborder": "Polyphaga",
      "guild": "insular forest-litter coprophage/detritivore",
      "traits": "Clypeal digging shield; lamellate antennal club",
      "enzymes": "Microbial lignocellulose & nitrogen mineralization",
      "eco": "Tropical forest floor nutrient burial",
      "len": 15535,
      "gcPct": 24.37,
      "sha256": "e1a6ea908f689373",
      "header": "QB005903.1 Ankaratrotrox sp. voucher sci3479 mitochondrion, complete genome"
    },
    {
      "id": "T017",
      "sector": "C",
      "acc": "QB005902.1",
      "species": "Manjarivolo sp. sci3334",
      "family": "Scarabaeidae",
      "suborder": "Polyphaga",
      "guild": "Endemic litter detritivore (Aulonocneminae)",
      "traits": "Fossorial foretibiae; compacted prothorax",
      "enzymes": "Symbiotic hindgut beta-glucosidase activity",
      "eco": "Humification & soil micro-pore aeration",
      "len": 15731,
      "gcPct": 24.58,
      "sha256": "b6eec46a983a22ca",
      "header": "QB005902.1 Manjarivolo sp. voucher sci3334 mitochondrion, complete genome"
    },
    {
      "id": "T018",
      "sector": "C",
      "acc": "QB005901.1",
      "species": "Aulonocnemis sp. sci3219",
      "family": "Scarabaeidae",
      "suborder": "Polyphaga",
      "guild": "Saproxylophagous bark-humus feeder",
      "traits": "Stridulatory apparatus; brood-care galleries",
      "enzymes": "Fungal/bacterial consortium wood-decay enzymes",
      "eco": "Deadwood carbon sequestration into soil",
      "len": 15809,
      "gcPct": 25.33,
      "sha256": "1380621aa29d2bc3",
      "header": "QB005901.1 Aulonocnemis sp. voucher sci3219 mitochondrion, complete genome"
    },
    {
      "id": "T019",
      "sector": "C",
      "acc": "QB005899.1",
      "species": "Chiron senegalensis",
      "family": "Scarabaeidae",
      "suborder": "Polyphaga",
      "guild": "Riparian alluvial-soil detritivore (Chironinae)",
      "traits": "Elongate cylindrical burrower; strong mandibles",
      "enzymes": "Humic-acid tolerant gut alkaline proteases",
      "eco": "Savanna flood-plain soil bioturbation",
      "len": 16140,
      "gcPct": 22.13,
      "sha256": "fc293db8b86cd3b8",
      "header": "QB005899.1 Chiron senegalensis voucher GR0557 mitochondrion, complete genome"
    },
    {
      "id": "T020",
      "sector": "C",
      "acc": "QB005898.1",
      "species": "Ataenius strigatus",
      "family": "Scarabaeidae",
      "suborder": "Polyphaga",
      "guild": "Turfgrass humus detritivore & root grazer (Aphodiinae)",
      "traits": "Dentate clypeus; tibial spurs",
      "enzymes": "Hindgut microbial pectin/hemicellulose fermentation",
      "eco": "Grassland thatch turnover & organic cycling",
      "len": 15111,
      "gcPct": 28.13,
      "sha256": "2f834947df16dba9",
      "header": "QB005898.1 Ataenius strigatus voucher GR0556 mitochondrion, complete genome"
    },
    {
      "id": "T021",
      "sector": "C",
      "acc": "QB005897.1",
      "species": "Amerisaprus mondacai",
      "family": "Scarabaeidae",
      "suborder": "Polyphaga",
      "guild": "Temperate forest dung/detritus feeder",
      "traits": "Lamellate olfactory sensilla; fossorial legs",
      "enzymes": "Coprophagous volatile esterases + nitrogenase symbionts",
      "eco": "Southern beech forest nutrient recycling",
      "len": 15029,
      "gcPct": 21.41,
      "sha256": "12e1291ae8c41dc7",
      "header": "QB005897.1 Amerisaprus mondacai voucher GR0349 mitochondrion, complete genome"
    },
    {
      "id": "T022",
      "sector": "C",
      "acc": "QB005896.1",
      "species": "Amerisaprus valdivia",
      "family": "Scarabaeidae",
      "suborder": "Polyphaga",
      "guild": "Valdivian rainforest detritivore-coprophage",
      "traits": "Expanded protibiae; moisture-retaining elytra",
      "enzymes": "Microbial volatile fatty-acid fermentation",
      "eco": "Temperate rainforest litter mineralization",
      "len": 15736,
      "gcPct": 20.56,
      "sha256": "278f47c105c88d6d",
      "header": "QB005896.1 Amerisaprus valdivia voucher GR0348 mitochondrion, complete genome"
    },
    {
      "id": "T023",
      "sector": "C",
      "acc": "PQ145550.1",
      "species": "Kibakoganea vernicata",
      "family": "Scarabaeidae",
      "suborder": "Polyphaga",
      "guild": "Derived phytophage / rhizophage (Rutelinae)",
      "traits": "Asymmetric tarsal claws; C-shaped rhizophagous larvae",
      "enzymes": "Alkaline midgut + symbiotic root-cellulose fermentation",
      "eco": "Canopy floral pollination & subterranean root herbivory",
      "len": 18655,
      "gcPct": 29.17,
      "sha256": "e61330dc70d9907b",
      "header": "PQ145550.1 Kibakoganea vernicata isolate Ru-yunnan mitochondrion, complete genome"
    },
    {
      "id": "T024",
      "sector": "C",
      "acc": "NC_087770.1",
      "species": "Anomala aulax",
      "family": "Scarabaeidae",
      "suborder": "Polyphaga",
      "guild": "Polyphagous folivore & rhizophagous white grub (Rutelinae)",
      "traits": "Lamellate pheromone antennae; fossorial foretibiae",
      "enzymes": "Endogenous + hindgut-symbiont cellulolytic complex",
      "eco": "Root-zone herbivory & soil turnover",
      "len": 16246,
      "gcPct": 24.04,
      "sha256": "61512536e32cf815",
      "header": "NC_087770.1 Anomala aulax mitochondrion, complete genome"
    },
    {
      "id": "T025",
      "sector": "D",
      "acc": "PQ895250.1",
      "species": "Scymnus tenuis",
      "family": "Coccinellidae",
      "suborder": "Polyphaga",
      "guild": "Sternorrhyncha predator (aphids & scales; Scymninae)",
      "traits": "Cryptonephridic tubules; waxy larval exudates; reflex bleeding",
      "enzymes": "Alkaloid autohaemorrhaging + extra-oral digestive lipases",
      "eco": "Top-down biological control of sap-feeding hemipterans",
      "len": 17492,
      "gcPct": 22.01,
      "sha256": "f7141ca4dae3731d",
      "header": "PQ895250.1 Scymnus tenuis isolate TS mitochondrion, complete genome"
    },
    {
      "id": "T026",
      "sector": "D",
      "acc": "PQ895249.1",
      "species": "Nephus sp. isolate TL",
      "family": "Coccinellidae",
      "suborder": "Polyphaga",
      "guild": "Coccoid & mealybug predator (Scymninae)",
      "traits": "Dense dorsal pubescence; tarsal adhesive setae",
      "enzymes": "Wax-ester hydrolases for mealybug ovisac penetration",
      "eco": "Orchard & greenhouse scale-insect suppression",
      "len": 16567,
      "gcPct": 18.96,
      "sha256": "b37d3a51f4643de4",
      "header": "PQ895249.1 Nephus sp. isolate TL mitochondrion, complete genome"
    },
    {
      "id": "T027",
      "sector": "D",
      "acc": "PQ895248.1",
      "species": "Scymnus (Pullus) sp. FZ",
      "family": "Coccinellidae",
      "suborder": "Polyphaga",
      "guild": "Arboreal aphidophagous predator",
      "traits": "Complete abdominal postcoxal lines; reflex bleeding",
      "enzymes": "Coccinelline-like defensive alkaloids + trehalase",
      "eco": "Forest canopy aphid colony regulation",
      "len": 16428,
      "gcPct": 21.48,
      "sha256": "05e11fd8e475de3e",
      "header": "PQ895248.1 Scymnus (Pullus) sp. isolate FZ mitochondrion, complete genome"
    },
    {
      "id": "T028",
      "sector": "D",
      "acc": "PQ895247.1",
      "species": "Scymnus takabayashii",
      "family": "Coccinellidae",
      "suborder": "Polyphaga",
      "guild": "Aphid & adelgid specialist predator",
      "traits": "Compact hemispherical dome; adhesive tarsal pads",
      "enzymes": "Cathepsin L cysteine proteinases + sucrose hydrolases",
      "eco": "Temperate shrub & crop aphid suppression",
      "len": 17091,
      "gcPct": 19.26,
      "sha256": "c65cbdc01138936e",
      "header": "PQ895247.1 Scymnus takabayashii isolate FR mitochondrion, complete genome"
    },
    {
      "id": "T029",
      "sector": "D",
      "acc": "PQ895246.1",
      "species": "Scymnus perdere",
      "family": "Coccinellidae",
      "suborder": "Polyphaga",
      "guild": "Sternorrhyncha micro-predator",
      "traits": "Cryptonephridic water-conserving Malpighian system",
      "enzymes": "AQP/DRIP rectal water-recovery channels + proteases",
      "eco": "Exposed-foliage drought-resilient biocontrol",
      "len": 16465,
      "gcPct": 19.27,
      "sha256": "64dde81c0b788f0f",
      "header": "PQ895246.1 Scymnus perdere isolate FO mitochondrion, complete genome"
    },
    {
      "id": "T030",
      "sector": "D",
      "acc": "PQ895245.1",
      "species": "Scymnus sp. isolate FH",
      "family": "Coccinellidae",
      "suborder": "Polyphaga",
      "guild": "Folicolous aphid/scale predator",
      "traits": "Larval wax-filament camouflage against ants",
      "enzymes": "Cuticular hydrocarbon mimicry + esterase detox",
      "eco": "Ant-tended hemipteran colony disruption",
      "len": 16584,
      "gcPct": 20.28,
      "sha256": "fa425e5e7365482a",
      "header": "PQ895245.1 Scymnus sp. isolate FH mitochondrion, complete genome"
    },
    {
      "id": "T031",
      "sector": "D",
      "acc": "PQ895244.1",
      "species": "Nephus koltzei",
      "family": "Coccinellidae",
      "suborder": "Polyphaga",
      "guild": "Pseudococcid (mealybug) specialist predator",
      "traits": "Short geniculate-clubbed antennae; pubescent elytra",
      "enzymes": "Ceramidase + triacylglycerol lipase prey digestion",
      "eco": "Subtropical citrus & crop mealybug regulation",
      "len": 17043,
      "gcPct": 20.24,
      "sha256": "36d0752a0b7e91be",
      "header": "PQ895244.1 Nephus koltzei isolate CK mitochondrion, complete genome"
    },
    {
      "id": "T032",
      "sector": "D",
      "acc": "PQ895243.1",
      "species": "Scymnus nephrospilus",
      "family": "Coccinellidae",
      "suborder": "Polyphaga",
      "guild": "Aposematic aphidophagous predator",
      "traits": "Red-maculate warning elytra; tibio-femoral autohaemorrhage",
      "enzymes": "Azaphenalene alkaloid biosynthesis + CYP450 detox",
      "eco": "High-density agricultural aphid outbreak control",
      "len": 17000,
      "gcPct": 21.66,
      "sha256": "6551fc9841f87c27",
      "header": "PQ895243.1 Scymnus nephrospilus isolate CF mitochondrion, complete genome"
    },
    {
      "id": "T033",
      "sector": "D",
      "acc": "PQ895242.1",
      "species": "Scymnus (Pullus) sp. CE",
      "family": "Coccinellidae",
      "suborder": "Polyphaga",
      "guild": "Canopy Sternorrhyncha predator",
      "traits": "Bifid tarsal claws; cryptonephridic rectal complex",
      "enzymes": "Serine collagenase + honeydew-sugar invertase",
      "eco": "Deciduous canopy sap-feeder regulation",
      "len": 16875,
      "gcPct": 19.49,
      "sha256": "98710d69b5a1ff36",
      "header": "PQ895242.1 Scymnus (Pullus) sp. isolate CE mitochondrion, complete genome"
    },
    {
      "id": "T034",
      "sector": "D",
      "acc": "PQ895241.1",
      "species": "Scymnus (Scymnus) sp. CD",
      "family": "Coccinellidae",
      "suborder": "Polyphaga",
      "guild": "Herbaceous-layer aphid predator",
      "traits": "Incomplete postcoxal line; rapid oviposition response",
      "enzymes": "Vitellogenin-coupled numerical response + CYP6 detox",
      "eco": "Agroecosystem aphid population stabilization",
      "len": 16897,
      "gcPct": 21.59,
      "sha256": "15562fb08871b7ff",
      "header": "PQ895241.1 Scymnus (Scymnus) sp. isolate CD mitochondrion, complete genome"
    },
    {
      "id": "T035",
      "sector": "E",
      "acc": "NC_008221.1",
      "species": "Anoplophora glabripennis",
      "family": "Cerambycidae",
      "suborder": "Polyphaga",
      "guild": "Primary hardwood xylophage / heartwood borer (Lamiinae)",
      "traits": "Chisel-like mandibles; elongated antennae; yeast symbionts",
      "enzymes": "HGT GH5 + GH45 cellulases, GH28 pectinases, xylanases",
      "eco": "Hardwood forest canopy mortality & gap succession",
      "len": 15774,
      "gcPct": 21.66,
      "sha256": "c03fe2506c1bd622",
      "header": "NC_008221.1 Anoplophora glabripennis mitochondrion, complete genome"
    },
    {
      "id": "T036",
      "sector": "E",
      "acc": "NC_087624.1",
      "species": "Monochamus guttulatus",
      "family": "Cerambycidae",
      "suborder": "Polyphaga",
      "guild": "Conifer subcortical & sapwood xylophage (Lamiinae)",
      "traits": "Long olfactory antennae; nematode-vectoring tracheal system",
      "enzymes": "GH5 sub-family 2 endoglucanases + CYP6 terpene detox",
      "eco": "Conifer deadwood decay & pine-wilt vector dynamics",
      "len": 17011,
      "gcPct": 21.76,
      "sha256": "ad6053002cc98e90",
      "header": "NC_087624.1 Monochamus guttulatus voucher SK1241 mitochondrion, complete genome"
    },
    {
      "id": "T037",
      "sector": "E",
      "acc": "NC_085678.1",
      "species": "Arctolamia fruhstorferi",
      "family": "Cerambycidae",
      "suborder": "Polyphaga",
      "guild": "Subtropical timber xylophage (Lamiinae)",
      "traits": "Spined pronotum; heavily sclerotized mandibular condyles",
      "enzymes": "Endogenous GH45 + GH5 beta-1,4-endoglucanases",
      "eco": "Subtropical coarse woody debris fragmentation",
      "len": 16014,
      "gcPct": 21.43,
      "sha256": "ed2e5992f7515375",
      "header": "NC_085678.1 Arctolamia fruhstorferi mitochondrion, complete genome"
    },
    {
      "id": "T038",
      "sector": "E",
      "acc": "NC_080229.1",
      "species": "Batocera horsfieldi",
      "family": "Cerambycidae",
      "suborder": "Polyphaga",
      "guild": "Deep-heartwood trunk borer (Lamiinae)",
      "traits": "Massive body size; stridulatory mesonotal file",
      "enzymes": "High-copy GH5 cellulase + fungal symbiont lignin-modification",
      "eco": "Riparian poplar/walnut biomass turnover",
      "len": 15414,
      "gcPct": 25.23,
      "sha256": "b13d6b9ba607e9fa",
      "header": "NC_080229.1 Batocera horsfieldi isolate tissue mitochondrion, complete genome"
    },
    {
      "id": "T039",
      "sector": "E",
      "acc": "QB076930.1",
      "species": "Tetropium gracilicorne",
      "family": "Cerambycidae",
      "suborder": "Polyphaga",
      "guild": "Conifer phloem-cambium borer (Spondylidinae)",
      "traits": "Flattened subcortical larva; urogomphi",
      "enzymes": "GH45 cellulase + GH5 mannanase (softwood galactoglucomannan)",
      "eco": "Boreal larch & spruce stand thinning",
      "len": 15417,
      "gcPct": 21.13,
      "sha256": "f2010f164e0fba56",
      "header": "QB076930.1 Tetropium gracilicorne voucher gra1 mitochondrion, complete genome"
    },
    {
      "id": "T040",
      "sector": "E",
      "acc": "QB045801.1",
      "species": "Tetropium staudingeri",
      "family": "Cerambycidae",
      "suborder": "Polyphaga",
      "guild": "Montane spruce subcortical xylophage (Spondylidinae)",
      "traits": "Divided compound eyes; subcortical pupal chamber",
      "enzymes": "Softwood hemicellulase (GH5) + monoterpene P450s",
      "eco": "Montane conifer nutrient release",
      "len": 14983,
      "gcPct": 21.21,
      "sha256": "f3fde0891b369201",
      "header": "QB045801.1 Tetropium staudingeri isolate Ts mitochondrion, complete genome"
    },
    {
      "id": "T041",
      "sector": "E",
      "acc": "PZ259265.1",
      "species": "Ropica dorsalis",
      "family": "Cerambycidae",
      "suborder": "Polyphaga",
      "guild": "Dead-twig saproxylophage (Lamiinae)",
      "traits": "Cryptic bark-mimicry; small twig-girdling mandibles",
      "enzymes": "GH5 endoglucanase + GH28 polygalacturonase",
      "eco": "Fine woody litter decomposition",
      "len": 15524,
      "gcPct": 24.47,
      "sha256": "5770ec39d49a3fc6",
      "header": "PZ259265.1 Ropica dorsalis mitochondrion, complete genome"
    },
    {
      "id": "T042",
      "sector": "E",
      "acc": "PZ747426.1",
      "species": "Anoplophora chinensis",
      "family": "Cerambycidae",
      "suborder": "Polyphaga",
      "guild": "Lower-trunk & root-collar xylophage (Lamiinae)",
      "traits": "Granulate basal elytra; T-shaped oviposition slits",
      "enzymes": "Expanded GH5 + GH28 + GH1 beta-glucosidase repertoire",
      "eco": "Broadleaf tree root-collar structural turnover",
      "len": 15805,
      "gcPct": 22.35,
      "sha256": "fe5c21890861f03f",
      "header": "PZ747426.1 Anoplophora chinensis isolate ApC-ABBM mitochondrion, complete genome"
    },
    {
      "id": "T043",
      "sector": "E",
      "acc": "PZ744470.1",
      "species": "Xystrocera festiva",
      "family": "Cerambycidae",
      "suborder": "Polyphaga",
      "guild": "Leguminous-tree sapwood borer (Cerambycinae)",
      "traits": "Metallic nocturnal habitus; calcareous pupal operculum",
      "enzymes": "Cerambycinae GH45 cellulase + xylan-degrading enzymes",
      "eco": "Tropical legume-tree succession & wood porosity",
      "len": 15699,
      "gcPct": 27.87,
      "sha256": "6765eafa145852a3",
      "header": "PZ744470.1 Xystrocera festiva voucher Bok-01 mitochondrion, complete genome"
    },
    {
      "id": "T044",
      "sector": "E",
      "acc": "PX568746.1",
      "species": "Encyclops hubeiensis",
      "family": "Cerambycidae",
      "suborder": "Polyphaga",
      "guild": "Rotten-wood saproxylophage & floral pollen feeder (Lepturinae)",
      "traits": "Prognathous floral-visiting head; setose galea",
      "enzymes": "Larval saproxylic GH45 + adult pectinase pollen digestion",
      "eco": "Dual deadwood decomposition & canopy pollination",
      "len": 16448,
      "gcPct": 20.28,
      "sha256": "fe8482e074e4a801",
      "header": "PX568746.1 Encyclops hubeiensis mitochondrion, complete genome"
    },
    {
      "id": "T045",
      "sector": "F",
      "acc": "NC_003372.1",
      "species": "Crioceris duodecimpunctata",
      "family": "Chrysomelidae",
      "suborder": "Polyphaga",
      "guild": "Monocot cladode folivore & berry feeder (Criocerinae)",
      "traits": "Stridulatory pars stridens; adhesive tarsal setae",
      "enzymes": "HGT GH45 cellulase + GH28 pectinase",
      "eco": "Asparagus/monocot herbivory & seed dispersal",
      "len": 15880,
      "gcPct": 23.11,
      "sha256": "35c86459c5ab5d74",
      "header": "NC_003372.1 Crioceris duodecimpunctata mitochondrion, complete genome"
    },
    {
      "id": "T046",
      "sector": "F",
      "acc": "NC_053358.1",
      "species": "Callosobruchus maculatus",
      "family": "Chrysomelidae",
      "suborder": "Polyphaga",
      "guild": "Endosperm seed predator (Bruchinae)",
      "traits": "Enlarged hind femora; cemented seed-coat oviposition",
      "enzymes": "GH5 beta-mannanase + GH28 pectinase + alpha-amylase inhibitor resistance",
      "eco": "Legume seed-bank regulation & co-evolutionary defense",
      "len": 18321,
      "gcPct": 21.25,
      "sha256": "1359ac14f1398515",
      "header": "NC_053358.1 Callosobruchus maculatus mitochondrion, complete genome"
    },
    {
      "id": "T047",
      "sector": "F",
      "acc": "NC_086766.1",
      "species": "Monolepta pallidula",
      "family": "Chrysomelidae",
      "suborder": "Polyphaga",
      "guild": "Polyphagous canopy folivore & rhizophagous larva (Galerucinae)",
      "traits": "Elongate metatarsi; subterranean root-feeding larvae",
      "enzymes": "Multi-copy GH28 polygalacturonases + GH45 cellulases",
      "eco": "Primary canopy defoliation & root-zone herbivory",
      "len": 15866,
      "gcPct": 21.22,
      "sha256": "3efc36316239cedc",
      "header": "NC_086766.1 Monolepta pallidula mitochondrion, complete genome"
    },
    {
      "id": "T048",
      "sector": "F",
      "acc": "NC_086765.1",
      "species": "Monolepta wilcoxi",
      "family": "Chrysomelidae",
      "suborder": "Polyphaga",
      "guild": "Subtropical broadleaf folivore (Galerucinae)",
      "traits": "Cryptonephridic water retention; gregarious feeding",
      "enzymes": "GH28 endo-polygalacturonase middle-lamella maceration",
      "eco": "Canopy leaf-area index regulation & frass nutrient flux",
      "len": 16985,
      "gcPct": 20.24,
      "sha256": "3e50c8342ce74322",
      "header": "NC_086765.1 Monolepta wilcoxi mitochondrion, complete genome"
    },
    {
      "id": "T049",
      "sector": "F",
      "acc": "NC_086764.1",
      "species": "Monolepta cavipennis",
      "family": "Chrysomelidae",
      "suborder": "Polyphaga",
      "guild": "Tropical forest folivore (Galerucinae)",
      "traits": "Sexually dimorphic elytral cavities; flight dispersal",
      "enzymes": "GH45 + GH28 PCWDE synergy + CYP6 phytoalexin detox",
      "eco": "Tropical forest herbivory & secondary metabolite cycling",
      "len": 16965,
      "gcPct": 20.67,
      "sha256": "7d80aa81f5a170af",
      "header": "NC_086764.1 Monolepta cavipennis mitochondrion, complete genome"
    },
    {
      "id": "T050",
      "sector": "F",
      "acc": "NC_085605.1",
      "species": "Gastrolina depressa",
      "family": "Chrysomelidae",
      "suborder": "Polyphaga",
      "guild": "Walnut specialist folivore (Chrysomelinae)",
      "traits": "Larval dorso-lateral defensive glands; aposematism",
      "enzymes": "Juglone/phenolic glycosylation + GH45/GH28 PCWDEs",
      "eco": "Host-specific Juglans defoliation & chemical arms race",
      "len": 15922,
      "gcPct": 20.9,
      "sha256": "c8d5386e5e3487b6",
      "header": "NC_085605.1 Gastrolina depressa mitochondrion, complete genome"
    },
    {
      "id": "T051",
      "sector": "F",
      "acc": "NC_082905.1",
      "species": "Trichochrysea japana",
      "family": "Chrysomelidae",
      "suborder": "Polyphaga",
      "guild": "Arboreal folivore & rhizophage (Eumolpinae)",
      "traits": "Setose metallic cuticle; root-feeding subterranean larvae",
      "enzymes": "GH28 pectin-methylesterase-coupled polygalacturonases",
      "eco": "Above- and below-ground coupled plant herbivory",
      "len": 15681,
      "gcPct": 22.59,
      "sha256": "24f9730bd3cb9349",
      "header": "NC_082905.1 Trichochrysea japana mitochondrion, complete genome"
    },
    {
      "id": "T052",
      "sector": "F",
      "acc": "NC_082137.1",
      "species": "Agetocera filicornis",
      "family": "Chrysomelidae",
      "suborder": "Polyphaga",
      "guild": "Cucurbitaceae specialist folivore (Galerucinae)",
      "traits": "Deformed antennal courtship segments; toxin sequestration",
      "enzymes": "Cucurbitacin triterpenoid sequestration + GH28/GH45",
      "eco": "Cucurbit pharmacophagy & co-evolutionary defense driver",
      "len": 15814,
      "gcPct": 23.42,
      "sha256": "a69ed5fd6eb633c1",
      "header": "NC_082137.1 Agetocera filicornis mitochondrion, complete genome"
    },
    {
      "id": "T053",
      "sector": "F",
      "acc": "NC_080283.1",
      "species": "Bruchus pisorum",
      "family": "Chrysomelidae",
      "suborder": "Polyphaga",
      "guild": "Univoltine legume seed endophage (Bruchinae)",
      "traits": "Larval prothoracic H-plate for pod penetration",
      "enzymes": "Seed-wall GH28 pectinase + vicilin/legumin cysteine proteases",
      "eco": "Annual pulse/Fabaceae seed mortality & dormancy pressure",
      "len": 16332,
      "gcPct": 21.82,
      "sha256": "6a325ad524f26fd9",
      "header": "NC_080283.1 Bruchus pisorum mitochondrion, complete genome"
    },
    {
      "id": "T054",
      "sector": "F",
      "acc": "NC_077572.1",
      "species": "Luperomorpha xanthodera",
      "family": "Chrysomelidae",
      "suborder": "Polyphaga",
      "guild": "Floricolous & folivorous flea beetle (Galerucinae: Alticini)",
      "traits": "Metafemoral彈-spring (Maulik organ); root-hair larvae",
      "enzymes": "Glucosinolate sulfatase / myrosinase-bypass + GH28",
      "eco": "Floral herbivory & crucifer chemical defense evolution",
      "len": 16021,
      "gcPct": 20.02,
      "sha256": "c1d05c79d35210cf",
      "header": "NC_077572.1 Luperomorpha xanthodera mitochondrion, complete genome"
    },
    {
      "id": "T055",
      "sector": "G",
      "acc": "NC_030765.1",
      "species": "Sitophilus oryzae",
      "family": "Curculionidae",
      "suborder": "Polyphaga",
      "guild": "Endophytophagous cereal-grain seed borer (Dryophthorinae)",
      "traits": "Elongate rostrum (oviposition drilling); bacteriome (Sodalis)",
      "enzymes": "GH28 pectinase + GH45 cellulase + Sodalis tyrosine provisioning",
      "eco": "Grass/cereal seed regulation & endosymbiotic cuticle synthesis",
      "len": 17602,
      "gcPct": 23.65,
      "sha256": "cbbf5e31161d2104",
      "header": "NC_030765.1 Sitophilus oryzae mitochondrion, complete genome"
    },
    {
      "id": "T056",
      "sector": "G",
      "acc": "NC_083152.1",
      "species": "Rhynchophorus phoenicis",
      "family": "Curculionidae",
      "suborder": "Polyphaga",
      "guild": "Monocot palm-stem endophytophage (Dryophthorinae)",
      "traits": "Powerful rostrum; aggregation-pheromone flight machinery",
      "enzymes": "Massive GH45 + GH28 + GH48 PCWDE expansion",
      "eco": "Tropical palm stand turnover & vascular bundle maceration",
      "len": 17161,
      "gcPct": 25.91,
      "sha256": "62870cb2521efc5f",
      "header": "NC_083152.1 Rhynchophorus phoenicis voucher VS9815 mitochondrion, complete genome"
    },
    {
      "id": "T057",
      "sector": "G",
      "acc": "NC_082136.1",
      "species": "Curculio bimaculatus",
      "family": "Curculionidae",
      "suborder": "Polyphaga",
      "guild": "Acorn/nut deep-seed endophytophage (Curculioninae)",
      "traits": "Hyper-elongate rostrum; geniculate antennae; soil diapause",
      "enzymes": "Tannin-tolerant gut + GH28/GH45 cotyledon hydrolases",
      "eco": "Fagaceae mast-seed predation & forest regeneration filter",
      "len": 18873,
      "gcPct": 23.35,
      "sha256": "6d0dd7b3d7cc350b",
      "header": "NC_082136.1 Curculio bimaculatus mitochondrion, complete genome"
    },
    {
      "id": "T058",
      "sector": "G",
      "acc": "NC_081966.1",
      "species": "Hylurgus ligniperda",
      "family": "Curculionidae",
      "suborder": "Polyphaga",
      "guild": "Subcortical pine-root & lower-bole phloem feeder (Scolytinae)",
      "traits": "Shortened rostrum; cylindrical bark-tunneling body; mycangial pits",
      "enzymes": "GH28/GH45 phloem hydrolases + Ophiostoma fungal vectoring",
      "eco": "Conifer root-collar decomposition & blue-stain fungal dispersal",
      "len": 17202,
      "gcPct": 23.19,
      "sha256": "5340614af4b2ca90",
      "header": "NC_081966.1 Hylurgus ligniperda mitochondrion, complete genome"
    },
    {
      "id": "T059",
      "sector": "G",
      "acc": "NC_079678.1",
      "species": "Tomicus yunnanensis",
      "family": "Curculionidae",
      "suborder": "Polyphaga",
      "guild": "Pine shoot-tip & trunk phloem borer (Scolytinae)",
      "traits": "Dentate elytral declivity; dual shoot/bole life cycle",
      "enzymes": "CYP6DE/CYP6BW alpha-pinene detoxification + GH45/GH28",
      "eco": "Subtropical pine forest stand mortality & succession",
      "len": 16088,
      "gcPct": 22.37,
      "sha256": "4e4d847fab8a5562",
      "header": "NC_079678.1 Tomicus yunnanensis mitochondrion, complete genome"
    },
    {
      "id": "T060",
      "sector": "G",
      "acc": "NC_079637.1",
      "species": "Tomicus minor",
      "family": "Curculionidae",
      "suborder": "Polyphaga",
      "guild": "Transverse-gallery pine phloem & fungus feeder (Scolytinae)",
      "traits": "Transverse maternal galleries; mycangial spore transport",
      "enzymes": "Phloem pectinase (GH28) + fungal ergosterol assimilation",
      "eco": "Scots/Yunnan pine weakened-tree culling & fungal symbiosis",
      "len": 17956,
      "gcPct": 21.59,
      "sha256": "c914726dc1c03d1b",
      "header": "NC_079637.1 Tomicus minor mitochondrion, complete genome"
    },
    {
      "id": "T061",
      "sector": "G",
      "acc": "NC_073111.1",
      "species": "Corigetus marmoratus",
      "family": "Curculionidae",
      "suborder": "Polyphaga",
      "guild": "Broad-nosed folivore & root-rhizophage (Entiminae)",
      "traits": "Short broad rostrum; deciduous mandibular cusps",
      "enzymes": "GH28/GH45 leaf-lamina hydrolases + xenobiotic GSTs",
      "eco": "Broadleaf shrub herbivory & subterranean root pruning",
      "len": 16224,
      "gcPct": 24.9,
      "sha256": "6f966c323966ec21",
      "header": "NC_073111.1 Corigetus marmoratus mitochondrion, complete genome"
    },
    {
      "id": "T062",
      "sector": "G",
      "acc": "NC_062125.1",
      "species": "Dryocoetes hectographus",
      "family": "Curculionidae",
      "suborder": "Polyphaga",
      "guild": "Boreal spruce/larch phloem-fungus feeder (Scolytinae)",
      "traits": "Polygamous stellate galleries; cuticular mycangia",
      "enzymes": "GH45 cellulase + GH28 pectinase + resin diterpene P450s",
      "eco": "Boreal windthrow spruce decomposition & fungal vectoring",
      "len": 16040,
      "gcPct": 25.87,
      "sha256": "ab2f6814767f72a8",
      "header": "NC_062125.1 Dryocoetes hectographus mitochondrion, complete genome"
    },
    {
      "id": "T063",
      "sector": "G",
      "acc": "NC_062131.1",
      "species": "Ips nitidus",
      "family": "Curculionidae",
      "suborder": "Polyphaga",
      "guild": "Alpine spruce mass-attack phloem borer (Scolytinae)",
      "traits": "4-spined elytral declivity; ipsdienol pheromone system",
      "enzymes": "De novo monoterpene pheromone synthesis (GPPS/CYP6) + PCWDEs",
      "eco": "Qinghai-Tibet plateau spruce stand-replacing disturbance",
      "len": 16367,
      "gcPct": 26.53,
      "sha256": "d9abe5a2bf08c0ce",
      "header": "NC_062131.1 Ips nitidus mitochondrion, complete genome"
    },
    {
      "id": "T064",
      "sector": "G",
      "acc": "NC_063906.1",
      "species": "Dendroctonus rufipennis",
      "family": "Curculionidae",
      "suborder": "Polyphaga",
      "guild": "Eruptive spruce-phloem killer & fungal mutualist (Scolytinae)",
      "traits": "Prothoracic mycangia; oral mycetangial bacterial bio-shield",
      "enzymes": "CYP6 resin-acid detox + GH45/GH28 + Leptographium symbiosis",
      "eco": "Continental boreal spruce mortality & carbon-cycle feedback",
      "len": 16937,
      "gcPct": 26.25,
      "sha256": "404df12d298e77e8",
      "header": "NC_063906.1 Dendroctonus rufipennis mitochondrion, complete genome"
    }
  ],
  "nuclear_loci_manifest": [
    {
      "acc": "XM_088035543.1",
      "len": 988,
      "gcPct": 43.02,
      "header": "XM_088035543.1 PREDICTED: Gnatocerus cornutus aquaporin AQPcic-like (LOC148175541), transcript variant X4, mRNA",
      "file": "NCBI_COLEOP_NUC_AQP_Cryptonephridic_XM_088035543.1.fasta"
    },
    {
      "acc": "XM_088035544.1",
      "len": 1171,
      "gcPct": 43.13,
      "header": "XM_088035544.1 PREDICTED: Gnatocerus cornutus aquaporin-like (LOC148175542), transcript variant X1, mRNA",
      "file": "NCBI_COLEOP_NUC_AQP_Cryptonephridic_XM_088035544.1.fasta"
    },
    {
      "acc": "XM_088035545.1",
      "len": 1114,
      "gcPct": 43.18,
      "header": "XM_088035545.1 PREDICTED: Gnatocerus cornutus aquaporin-like (LOC148175542), transcript variant X2, mRNA",
      "file": "NCBI_COLEOP_NUC_AQP_Cryptonephridic_XM_088035545.1.fasta"
    },
    {
      "acc": "XM_088036529.1",
      "len": 979,
      "gcPct": 44.33,
      "header": "XM_088036529.1 PREDICTED: Gnatocerus cornutus aquaporin AQPcic-like (LOC148175540), transcript variant X1, mRNA",
      "file": "NCBI_COLEOP_NUC_AQP_Cryptonephridic_XM_088036529.1.fasta"
    },
    {
      "acc": "XM_088036530.1",
      "len": 835,
      "gcPct": 43.59,
      "header": "XM_088036530.1 PREDICTED: Gnatocerus cornutus aquaporin AQPcic-like (LOC148175540), transcript variant X2, mRNA",
      "file": "NCBI_COLEOP_NUC_AQP_Cryptonephridic_XM_088036530.1.fasta"
    },
    {
      "acc": "XM_088036989.1",
      "len": 669,
      "gcPct": 45.74,
      "header": "XM_088036989.1 PREDICTED: Gnatocerus cornutus aquaporin-4-like (LOC148175538), mRNA",
      "file": "NCBI_COLEOP_NUC_AQP_Cryptonephridic_XM_088036989.1.fasta"
    },
    {
      "acc": "NM_001365727.2",
      "len": 2180,
      "gcPct": 37.02,
      "header": "NM_001365727.2 Leptinotarsa decemlineata cytochrome P450 6-like (LOC111512152), mRNA",
      "file": "NCBI_COLEOP_NUC_CYP6_Detox_P450_NM_001365727.2.fasta"
    },
    {
      "acc": "NM_001365732.1",
      "len": 1557,
      "gcPct": 40.98,
      "header": "NM_001365732.1 Leptinotarsa decemlineata cytochrome P450 6-like (LOC113174994), mRNA",
      "file": "NCBI_COLEOP_NUC_CYP6_Detox_P450_NM_001365732.1.fasta"
    },
    {
      "acc": "PQ050620.1",
      "len": 969,
      "gcPct": 46.13,
      "header": "PQ050620.1 Glenea cantor endoglucanase Z2 mRNA, complete cds",
      "file": "NCBI_COLEOP_NUC_GH5_Mannanase_Cellulase_PQ050620.1.fasta"
    },
    {
      "acc": "PQ050621.1",
      "len": 969,
      "gcPct": 41.9,
      "header": "PQ050621.1 Glenea cantor endoglucanase Z3 mRNA, complete cds",
      "file": "NCBI_COLEOP_NUC_GH5_Mannanase_Cellulase_PQ050621.1.fasta"
    },
    {
      "acc": "PQ050622.1",
      "len": 978,
      "gcPct": 42.13,
      "header": "PQ050622.1 Glenea cantor endoglucanase Z4 mRNA, complete cds",
      "file": "NCBI_COLEOP_NUC_GH5_Mannanase_Cellulase_PQ050622.1.fasta"
    },
    {
      "acc": "PQ050623.1",
      "len": 975,
      "gcPct": 52.41,
      "header": "PQ050623.1 Glenea cantor endoglucanase Z5 mRNA, complete cds",
      "file": "NCBI_COLEOP_NUC_GH5_Mannanase_Cellulase_PQ050623.1.fasta"
    },
    {
      "acc": "PQ050624.1",
      "len": 975,
      "gcPct": 52.82,
      "header": "PQ050624.1 Glenea cantor endoglucanase Z7 mRNA, complete cds",
      "file": "NCBI_COLEOP_NUC_GH5_Mannanase_Cellulase_PQ050624.1.fasta"
    },
    {
      "acc": "PQ050625.1",
      "len": 972,
      "gcPct": 43.31,
      "header": "PQ050625.1 Glenea cantor endoglucanase Z8 mRNA, complete cds",
      "file": "NCBI_COLEOP_NUC_GH5_Mannanase_Cellulase_PQ050625.1.fasta"
    },
    {
      "acc": "LC955850.1",
      "len": 855,
      "gcPct": 35.44,
      "header": "LC955850.1 Apterodela ovipennis TS019 gene for 28S ribosomal RNA, partial sequence",
      "file": "NCBI_COLEOP_NUC_NUC_28S_rRNA_LC955850.1.fasta"
    },
    {
      "acc": "LC955851.1",
      "len": 855,
      "gcPct": 35.2,
      "header": "LC955851.1 Apterodela ovipennis Y006 gene for 28S ribosomal RNA, partial sequence",
      "file": "NCBI_COLEOP_NUC_NUC_28S_rRNA_LC955851.1.fasta"
    },
    {
      "acc": "LC955852.1",
      "len": 855,
      "gcPct": 35.2,
      "header": "LC955852.1 Apterodela ovipennis Y007 gene for 28S ribosomal RNA, partial sequence",
      "file": "NCBI_COLEOP_NUC_NUC_28S_rRNA_LC955852.1.fasta"
    },
    {
      "acc": "LC955853.1",
      "len": 856,
      "gcPct": 35.75,
      "header": "LC955853.1 Apterodela unipunctata Y001 gene for 28S ribosomal RNA, partial sequence",
      "file": "NCBI_COLEOP_NUC_NUC_28S_rRNA_LC955853.1.fasta"
    },
    {
      "acc": "LC955854.1",
      "len": 856,
      "gcPct": 35.75,
      "header": "LC955854.1 Apterodela unipunctata Y002 gene for 28S ribosomal RNA, partial sequence",
      "file": "NCBI_COLEOP_NUC_NUC_28S_rRNA_LC955854.1.fasta"
    },
    {
      "acc": "LC955855.1",
      "len": 856,
      "gcPct": 35.75,
      "header": "LC955855.1 Apterodela unipunctata Y003 gene for 28S ribosomal RNA, partial sequence",
      "file": "NCBI_COLEOP_NUC_NUC_28S_rRNA_LC955855.1.fasta"
    },
    {
      "acc": "LC955856.1",
      "len": 847,
      "gcPct": 35.66,
      "header": "LC955856.1 Apterodela unipunctata Y004 gene for 28S ribosomal RNA, partial sequence",
      "file": "NCBI_COLEOP_NUC_NUC_28S_rRNA_LC955856.1.fasta"
    },
    {
      "acc": "LC955857.1",
      "len": 849,
      "gcPct": 35.81,
      "header": "LC955857.1 Apterodela unipunctata Y005 gene for 28S ribosomal RNA, partial sequence",
      "file": "NCBI_COLEOP_NUC_NUC_28S_rRNA_LC955857.1.fasta"
    },
    {
      "acc": "XM_023173738.2",
      "len": 864,
      "gcPct": 47.22,
      "header": "XM_023173738.2 PREDICTED: Leptinotarsa decemlineata endoglucanase (LOC111517547), mRNA",
      "file": "XM_023173738.2_478185031b8c.fasta"
    },
    {
      "acc": "XM_023173742.2",
      "len": 1022,
      "gcPct": 45.4,
      "header": "XM_023173742.2 PREDICTED: Leptinotarsa decemlineata endoglucanase (LOC111517548), transcript variant X3, mRNA",
      "file": "XM_023173742.2_2d787c6a1203.fasta"
    },
    {
      "acc": "XM_023173743.2",
      "len": 1092,
      "gcPct": 45.24,
      "header": "XM_023173743.2 PREDICTED: Leptinotarsa decemlineata endoglucanase (LOC111517552), transcript variant X1, mRNA",
      "file": "XM_023173743.2_85983c5957e7.fasta"
    },
    {
      "acc": "XM_023173746.2",
      "len": 946,
      "gcPct": 47.89,
      "header": "XM_023173746.2 PREDICTED: Leptinotarsa decemlineata endoglucanase (LOC111517551), mRNA",
      "file": "XM_023173746.2_f0d577bb2b1b.fasta"
    },
    {
      "acc": "XM_023173747.2",
      "len": 931,
      "gcPct": 45.33,
      "header": "XM_023173747.2 PREDICTED: Leptinotarsa decemlineata endoglucanase (LOC111517552), transcript variant X3, mRNA",
      "file": "XM_023173747.2_a9cce0633d74.fasta"
    },
    {
      "acc": "XM_074184928.1",
      "len": 1047,
      "gcPct": 46.42,
      "header": "XM_074184928.1 PREDICTED: Leptinotarsa decemlineata endoglucanase (LOC111517552), transcript variant X2, mRNA",
      "file": "XM_074184928.1_81d1e5e505fb.fasta"
    },
    {
      "acc": "XM_076400308.1",
      "len": 2479,
      "gcPct": 38.04,
      "header": "XM_076400308.1 PREDICTED: Rhynchophorus ferrugineus endoglucanase F (LOC143193877), transcript variant X1, mRNA",
      "file": "XM_076400308.1_b214b0b71ff8.fasta"
    },
    {
      "acc": "XM_076400309.1",
      "len": 1623,
      "gcPct": 39.93,
      "header": "XM_076400309.1 PREDICTED: Rhynchophorus ferrugineus endoglucanase F (LOC143193877), transcript variant X2, mRNA",
      "file": "XM_076400309.1_6e7cb98555ea.fasta"
    },
    {
      "acc": "XM_076400310.1",
      "len": 1622,
      "gcPct": 39.46,
      "header": "XM_076400310.1 PREDICTED: Rhynchophorus ferrugineus endoglucanase F (LOC143193877), transcript variant X3, mRNA",
      "file": "XM_076400310.1_ea342823eca7.fasta"
    },
    {
      "acc": "XM_076400311.1",
      "len": 1572,
      "gcPct": 40.27,
      "header": "XM_076400311.1 PREDICTED: Rhynchophorus ferrugineus endoglucanase F (LOC143193877), transcript variant X4, mRNA",
      "file": "XM_076400311.1_7c89db343bb0.fasta"
    },
    {
      "acc": "XM_076400312.1",
      "len": 1501,
      "gcPct": 40.51,
      "header": "XM_076400312.1 PREDICTED: Rhynchophorus ferrugineus endoglucanase F (LOC143193877), transcript variant X5, mRNA",
      "file": "XM_076400312.1_e256bf32f868.fasta"
    },
    {
      "acc": "XM_076407000.1",
      "len": 934,
      "gcPct": 46.15,
      "header": "XM_076407000.1 PREDICTED: Rhynchophorus ferrugineus endoglucanase (LOC143198059), mRNA",
      "file": "XM_076407000.1_763a17c1397d.fasta"
    },
    {
      "acc": "XM_076408428.1",
      "len": 2111,
      "gcPct": 44.48,
      "header": "XM_076408428.1 PREDICTED: Rhynchophorus ferrugineus endoglucanase F (LOC143198856), mRNA",
      "file": "XM_076408428.1_dec3b7fc1285.fasta"
    },
    {
      "acc": "XM_076416151.1",
      "len": 1185,
      "gcPct": 46.92,
      "header": "XM_076416151.1 PREDICTED: Rhynchophorus ferrugineus polygalacturonase (LOC143203840), mRNA",
      "file": "XM_076416151.1_8399ea69779f.fasta"
    },
    {
      "acc": "XM_076416153.1",
      "len": 1182,
      "gcPct": 47.55,
      "header": "XM_076416153.1 PREDICTED: Rhynchophorus ferrugineus polygalacturonase (LOC143203843), mRNA",
      "file": "XM_076416153.1_b38d6e0c2653.fasta"
    },
    {
      "acc": "XM_076416156.1",
      "len": 1157,
      "gcPct": 48.23,
      "header": "XM_076416156.1 PREDICTED: Rhynchophorus ferrugineus polygalacturonase (LOC143203845), mRNA",
      "file": "XM_076416156.1_1ea7571cee36.fasta"
    },
    {
      "acc": "XM_076416491.1",
      "len": 1155,
      "gcPct": 45.02,
      "header": "XM_076416491.1 PREDICTED: Rhynchophorus ferrugineus polygalacturonase (LOC143204052), mRNA",
      "file": "XM_076416491.1_557d6f9dc4c3.fasta"
    },
    {
      "acc": "XM_076418249.1",
      "len": 1207,
      "gcPct": 38.53,
      "header": "XM_076418249.1 PREDICTED: Rhynchophorus ferrugineus polygalacturonase (LOC143205152), mRNA",
      "file": "XM_076418249.1_aaaf6581a7f7.fasta"
    }
  ]
}